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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 15ChIP-seq
  • 9DNase-seq
  • 4ATAC-seq
Assay category
  • 15DNA binding
  • 13DNA accessibility
Target of assay
  • 9histone
  • 9histone modification
  • 6RNA binding protein
  • 6transcription factor
  • 5narrow histone mark
  • 4broad histone mark
Date released
  • 15June, 2019
  • 5October, 2018
  • 3August, 2017
  • 3October, 2019
  • 1November, 2018
  • 1November, 2020
Available data
  • 593bam
  • 570bigWig
  • 478tsv
  • 101fastq
  • 75bed narrowPeak
  • 28bigBed narrowPeak
  • 27bed bed3+
  • 22tagAlign
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 28Homo sapiens
Biosample type
  • 15primary cell
  • 10tissue
  • 3in vitro differentiated cells
Organ
  • 358liver
  • 127brain
  • 104kidney
  • 94heart
  • 91pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 76epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 28AMP
Genome assembly (visualization)
  • 27hg19
  • 25GRCh38
Lab
  • 28AMP-T2D consortium
Audit category:
  • 10inconsistent ontology term
BIOSAMPLE
ASSAY

28 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
primary cell
cardiac fibroblast33
mesenchymal stem cell6
brain pericyte1
hepatic stellate cell1
osteoblast1
tissue
omental fat pad32
subcutaneous adipose tissue21
adipose tissue11
in vitro differentiated cells
adipocyte12
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