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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 36ChIP-seq
  • 22ATAC-seq
  • 17DNase-seq
  • 1FAIRE-seq
Assay category
  • 40DNA accessibility
  • 36DNA binding
Target of assay
  • 29histone
  • 29histone modification
  • 15narrow histone mark
  • 14broad histone mark
  • 7RNA binding protein
  • 7transcription factor
  • 1chromatin remodeller
Date released
  • 18June, 2019
  • 14December, 2017
  • 14October, 2019
  • 14September, 2018
  • 5September, 2017
  • 4May, 2019
  • 4November, 2017
  • 3August, 2017
Available data
  • 317bam
  • 301bigWig
  • 257fastq
  • 156tsv
  • 151bed narrowPeak
  • 80zippedFastqFolder
  • 76bigBed narrowPeak
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 76Homo sapiens
Biosample type
  • 61primary cell
  • 14in vitro differentiated cells
  • 1cell line
Organ
  • 358liver
  • 127brain
  • 104kidney
  • 94heart
  • 91pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 76epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 76AMP
Genome assembly (visualization)
  • 75GRCh38
  • 70hg19
Lab
  • 76AMP-T2D consortium
Audit category:
  • 5inconsistent ontology term
BIOSAMPLE
ASSAY

76 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein1021
pancreatic beta cell7
pancreatic alpha cell6
kidney epithelial cell41
pancreatic acinar cell5
in vitro differentiated cells
hepatocyte14
cell line
glomerular visceral epithelial cell1
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