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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
350
ChIP-seq
5
DNase-seq
1
ATAC-seq
Assay category
350
DNA binding
6
DNA accessibility
Target of assay
318
transcription factor
81
recombinant protein
53
RNA binding protein
29
histone
29
histone modification
22
chromatin remodeller
18
broad histone mark
11
narrow histone mark
5
other context
5
other post-translational modification
Date released
249
November, 2017
55
November, 2018
36
December, 2017
6
August, 2017
6
January, 2019
3
December, 2018
1
June, 2019
Available data
679
bam
614
bigWig
474
fastq
436
bed narrowPeak
356
bigBed narrowPeak
170
tsv
82
tagAlign
63
bed broadPeak
63
bigBed broadPeak
9
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
vcf
Organism
356
Homo sapiens
Biosample type
293
cell line
62
tissue
1
primary cell
Organ
358
liver
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
356
AMP
Genome assembly (visualization)
352
hg19
324
GRCh38
Lab
356
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
organ_slims!
brain
epithelium
BIOSAMPLE
ASSAY
356 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
293
tissue
liver
38
2
spleen
12
1
right lobe of liver
7
1
1
primary cell
hepatic stellate cell
1
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