Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
352
ChIP-seq
5
DNase-seq
1
ATAC-seq
Assay category
352
DNA binding
6
DNA accessibility
Target of assay
314
transcription factor
81
recombinant protein
55
RNA binding protein
35
histone
35
histone modification
23
chromatin remodeller
21
broad histone mark
14
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
51
November, 2018
50
December, 2017
6
August, 2017
2
June, 2019
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
358
Homo sapiens
Biosample type
293
cell line
49
tissue
14
in vitro differentiated cells
2
primary cell
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
358
AMP
Genome assembly (visualization)
354
hg19
326
GRCh38
Lab
358
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
358 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
293
tissue
liver
38
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatic stellate cell
1
hepatocyte
1
Download