Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
22
ATAC-seq
8
DNase-seq
2
FAIRE-seq
Assay category
49
DNA binding
32
DNA accessibility
Target of assay
49
histone
49
histone modification
30
broad histone mark
19
narrow histone mark
transcription factor
6
RNA binding protein
Date released
30
October, 2018
17
August, 2017
14
September, 2018
7
October, 2019
5
September, 2017
4
June, 2019
3
November, 2018
1
May, 2019
Available data
670
bam
604
bigWig
454
fastq
417
tsv
201
bed narrowPeak
81
bigBed narrowPeak
80
zippedFastqFolder
22
bed bed3+
21
bed broadPeak
18
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
75
Homo sapiens
Biosample type
52
tissue
22
primary cell
7
cell line
Organ
124
brain
102
kidney
86
heart
limb
81
pancreas
78
vasculature
75
blood vessel
69
epithelium
47
musculature of body
44
liver
26
nerve
24
artery
22
connective tissue
18
ureter
13
vein
7
spleen
5
adipose tissue
5
eye
blood
3
bodily fluid
Project
81
AMP
Genome assembly (visualization)
79
GRCh38
79
hg19
Lab
81
AMP-T2D consortium
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
blood
limb
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
81 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
body of pancreas
17
4
pancreas
12
2
1
endocrine pancreas
14
islet of Langerhans
1
1
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
Panc1
6
1
Download