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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 59ChIP-seq
  • 22ATAC-seq
  • 8DNase-seq
  • 2FAIRE-seq
Assay category
  • 59DNA binding
  • 32DNA accessibility
Target of assay
  • 49histone
  • 49histone modification
  • 30broad histone mark
  • 19narrow histone mark
  • 10transcription factor
  • 6RNA binding protein
Date released
  • 40October, 2018
  • 17August, 2017
  • 14September, 2018
  • 7October, 2019
  • 5September, 2017
  • 4June, 2019
  • 3November, 2018
  • 1May, 2019
Available data
  • 689bam
  • 623bigWig
  • 471fastq
  • 417tsv
  • 214bed narrowPeak
  • 91bigBed narrowPeak
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 85Homo sapiens
Biosample type
  • 62tissue
  • 22primary cell
  • 7cell line
Organ
  • 358liver
  • 127brain
  • 104kidney
  • 94heart
  • 91pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 76epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 91AMP
Genome assembly (visualization)
  • 89GRCh38
  • 89hg19
Lab
  • 91AMP-T2D consortium
Audit category:
  • 5inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

91 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
body of pancreas264
pancreas1321
endocrine pancreas14
islet of Langerhans11
primary cell
pancreatic beta cell7
pancreatic alpha cell6
pancreatic acinar cell5
pancreatic ductal cell4
cell line
Panc161
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