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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 792ChIP-seq
  • 184DNase-seq
  • 24ATAC-seq
  • 2FAIRE-seq
Assay category
  • 792DNA binding
  • 210DNA accessibility
Target of assay
  • 402transcription factor
  • 385histone
  • 385histone modification
  • 238broad histone mark
  • 147narrow histone mark
  • 91RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • 181June, 2019
  • 97May, 2019
  • 71November, 2018
  • 67October, 2019
  • 64April, 2019
  • 48December, 2017
  • 44October, 2018
  • 41August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 1November, 2020
Available data
  • 2909bam
  • 2702bigWig
  • 1644bed narrowPeak
  • 1299tsv
  • 1229fastq
  • 1002bigBed narrowPeak
  • 296bed broadPeak
  • 282tagAlign
  • 261bigBed broadPeak
  • 206bed bed3+
  • 156txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 16bedpe bed3+
  • 15hic
  • 7bed bedgraph
  • 6bed bed3
  • 6csv
  • 5hdf5
  • 4tar
  • 2ibed
  • 1tbi
  • 1vcf
Organism
  • 996Homo sapiens
Biosample type
  • 532tissue
  • 355cell line
  • 100primary cell
  • 15in vitro differentiated cells
Organ
  • 355liver
  • 117brain
  • 98kidney
  • 88pancreas
  • 87heart
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 74epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 26nerve
  • 25artery
  • 18connective tissue
  • 18ureter
  • 13spleen
  • 13vein
  • 9adipose tissue
  • 4eye
Project
  • 1002AMP
Genome assembly (visualization)
  • 964GRCh38
  • 933hg19
Lab
  • 1002AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 18inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

1002 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver361
body of pancreas264
heart left ventricle282
kidney1811
tibial nerve242
cell line
HepG2293
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
pancreatic alpha cell6
in vitro differentiated cells
hepatocyte14
adipocyte1
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