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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 335ChIP-seq
  • 187DNase-seq
  • 27ATAC-seq
  • 4FAIRE-seq
Assay category
  • 335DNA binding
  • 218DNA accessibility
Target of assay
  • 298histone
  • 298histone modification
  • 197broad histone mark
  • 101narrow histone mark
  • 37transcription factor
  • 22RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
Date released
  • 179June, 2019
  • 85May, 2019
  • 63April, 2019
  • 57November, 2017
  • 47October, 2019
  • 38October, 2018
  • 25August, 2017
  • 15November, 2018
  • 14September, 2018
  • 7December, 2017
  • 6January, 2019
  • 6October, 2017
  • 5September, 2017
  • 3December, 2018
  • 2July, 2019
  • 1November, 2020
Available data
  • 2716bam
  • 2558bigWig
  • 1531tsv
  • 1262bed narrowPeak
  • 857fastq
  • 553bigBed narrowPeak
  • 372tagAlign
  • 234bed bed3+
  • 223bed broadPeak
  • 186bigBed broadPeak
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 19hic
  • 17bedpe bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11bed bed3
  • 8csv
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 547Homo sapiens
Biosample type
  • 508tissue
  • 41primary cell
  • 2cell line
  • 2in vitro differentiated cells
Organ
  • 116brain
  • 91kidney
  • 89heart
  • 80limb
  • 77pancreas
  • 54blood vessel
  • 54vasculature
  • 38musculature of body
  • 28epithelium
  • 26nerve
  • 24connective tissue
  • 21artery
  • 18liver
  • 18ureter
  • 13spleen
  • 10adipose tissue
  • 3eye
  • 2blood
  • 2bodily fluid
  • 1vein
Project
  • 553AMP
Genome assembly (visualization)
  • 545GRCh38
  • 481hg19
Lab
  • 553AMP-T2D consortium
Audit category:
  • 9inconsistent ontology term
Audit category:
  • 3missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

553 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
kidney18131
heart left ventricle273
tibial nerve242
heart718
body of pancreas194
primary cell
pancreatic beta cell7
mesenchymal stem cell6
pancreatic alpha cell6
pancreatic acinar cell5
pancreatic ductal cell4
cell line
GM128782
in vitro differentiated cells
adipocyte2
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