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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
335
ChIP-seq
187
DNase-seq
27
ATAC-seq
4
FAIRE-seq
Assay category
335
DNA binding
218
DNA accessibility
Target of assay
298
histone
298
histone modification
197
broad histone mark
101
narrow histone mark
37
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
179
June, 2019
85
May, 2019
63
April, 2019
57
November, 2017
47
October, 2019
38
October, 2018
25
August, 2017
15
November, 2018
14
September, 2018
7
December, 2017
6
January, 2019
6
October, 2017
5
September, 2017
3
December, 2018
2
July, 2019
1
November, 2020
Available data
2716
bam
2558
bigWig
1531
tsv
1262
bed narrowPeak
857
fastq
553
bigBed narrowPeak
372
tagAlign
234
bed bed3+
223
bed broadPeak
186
bigBed broadPeak
158
txt
153
zippedFastqFolder
64
xls
19
hic
17
bedpe bed3+
16
bed bedMethyl
16
bigBed bedMethyl
11
bed bed3
8
csv
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
547
Homo sapiens
Biosample type
508
tissue
41
primary cell
2
cell line
2
in vitro differentiated cells
Organ
116
brain
91
kidney
89
heart
80
limb
77
pancreas
54
blood vessel
54
vasculature
38
musculature of body
28
epithelium
26
nerve
24
connective tissue
21
artery
18
liver
18
ureter
13
spleen
10
adipose tissue
3
eye
2
blood
2
bodily fluid
1
vein
Project
553
AMP
Genome assembly (visualization)
545
GRCh38
481
hg19
Lab
553
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
replication_type!
isogenic
BIOSAMPLE
ASSAY
553 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
kidney
18
13
1
heart left ventricle
27
3
tibial nerve
24
2
heart
7
18
body of pancreas
19
4
+ See 52 more…
primary cell
pancreatic beta cell
7
mesenchymal stem cell
6
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 10 more…
cell line
GM12878
2
in vitro differentiated cells
adipocyte
2
See all biosamples
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