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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 475ChIP-seq
  • 47DNase-seq
  • 4FAIRE-seq
  • 3ATAC-seq
Assay category
  • 475DNA binding
  • 54DNA accessibility
Target of assay
  • 371transcription factor
  • 99histone
  • 99histone modification
  • 81recombinant protein
  • 73RNA binding protein
  • 50narrow histone mark
  • 49broad histone mark
  • 32chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 255November, 2017
  • 60June, 2019
  • 60November, 2018
  • 45December, 2017
  • 27December, 2018
  • 26October, 2019
  • 18August, 2017
  • 15January, 2019
  • 12May, 2019
  • 8October, 2018
  • 2July, 2019
  • 1April, 2019
Available data
  • 1159bam
  • 1078bigWig
  • 728bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • 371tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 529Homo sapiens
Biosample type
  • 353cell line
  • 82tissue
  • 77primary cell
  • 17in vitro differentiated cells
Organ
  • 343liver
  • 52blood
  • 52bodily fluid
  • 50epithelium
  • 29vasculature
  • 25blood vessel
  • 21brain
  • 19kidney
  • 17pancreas
  • 14connective tissue
  • 12heart
  • 12vein
  • 9musculature of body
  • 5eye
  • 4artery
  • 4limb
  • 1adipose tissue
Project
  • 529AMP
Genome assembly (visualization)
  • 512hg19
  • 487GRCh38
Lab
  • 529AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 21inconsistent ontology term
Audit category:
  • 12missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

529 results

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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
cell line
HepG2293
GM1287852
Panc161
glomerular visceral epithelial cell1
tissue
liver331
body of pancreas7
thoracic aorta6
heart4
frontal cortex21
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1011
skeletal muscle satellite cell7
mesenchymal stem cell6
kidney epithelial cell41
in vitro differentiated cells
hepatocyte14
adipocyte12
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