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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 25DNase-seq
  • 9ChIP-seq
  • 3ATAC-seq
  • 3FAIRE-seq
Assay category
  • 31DNA accessibility
  • 9DNA binding
Target of assay
  • 6histone
  • 6histone modification
  • 4broad histone mark
  • 3transcription factor
  • 2RNA binding protein
  • 2narrow histone mark
Date released
  • 29June, 2019
  • 3October, 2019
  • 2December, 2017
  • 2July, 2019
  • 2November, 2018
  • 1August, 2017
  • 1October, 2018
Available data
  • 483bam
  • 467bigWig
  • 302tsv
  • 173bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 40Homo sapiens
Biosample type
  • 29tissue
  • 9primary cell
  • 2in vitro differentiated cells
Organ
  • 10brain
  • 10connective tissue
  • 7heart
  • 6kidney
  • 3liver
  • 3pancreas
  • 2epithelium
  • 2eye
  • 1adipose tissue
Project
  • 40AMP
Genome assembly (visualization)
  • 34GRCh38
  • 30hg19
Lab
  • 40AMP-T2D consortium
Audit category:
  • 6inconsistent ontology term
BIOSAMPLE
ASSAY

40 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
FAIRE-seq
tissue
heart4
frontal cortex21
kidney21
liver12
brain2
primary cell
mesenchymal stem cell6
cardiac fibroblast1
kidney glomerular epithelial cell1
kidney tubule cell1
in vitro differentiated cells
adipocyte2
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