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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 466ChIP-seq
  • 22DNase-seq
  • 1FAIRE-seq
Assay category
  • 466DNA binding
  • 23DNA accessibility
Target of assay
  • 368transcription factor
  • 93histone
  • 93histone modification
  • 81recombinant protein
  • 71RNA binding protein
  • 48narrow histone mark
  • 45broad histone mark
  • 32chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 255November, 2017
  • 58November, 2018
  • 43December, 2017
  • 31June, 2019
  • 27December, 2018
  • 23October, 2019
  • 17August, 2017
  • 15January, 2019
  • 12May, 2019
  • 7October, 2018
  • 1April, 2019
Available data
  • 676bam
  • 611bigWig
  • 555bed narrowPeak
  • 501fastq
  • 489bigBed narrowPeak
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 69tsv
  • 39bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 489Homo sapiens
Biosample type
  • 353cell line
  • 68primary cell
  • 53tissue
  • 15in vitro differentiated cells
Organ
  • 340liver
  • 52blood
  • 52bodily fluid
  • 48epithelium
  • 29vasculature
  • 25blood vessel
  • 14pancreas
  • 13kidney
  • 12vein
  • 11brain
  • 9musculature of body
  • 5heart
  • 4artery
  • 4connective tissue
  • 4limb
  • 3eye
Project
  • 489AMP
Genome assembly (visualization)
  • 482hg19
  • 453GRCh38
Lab
  • 489AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 15inconsistent ontology term
Audit category:
  • 12missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

489 results

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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
cell line
HepG2293
GM1287852
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1011
skeletal muscle satellite cell7
kidney epithelial cell41
astrocyte of the cerebellum21
tissue
liver31
body of pancreas7
thoracic aorta6
tibial artery3
right lobe of liver2
in vitro differentiated cells
hepatocyte14
adipocyte1
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