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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 326ChIP-seq
  • 162DNase-seq
  • 24ATAC-seq
  • 1FAIRE-seq
Assay category
  • 326DNA binding
  • 187DNA accessibility
Target of assay
  • 292histone
  • 292histone modification
  • 193broad histone mark
  • 99narrow histone mark
  • 34transcription factor
  • 20RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
Date released
  • 150June, 2019
  • 85May, 2019
  • 63April, 2019
  • 57November, 2017
  • 44October, 2019
  • 37October, 2018
  • 24August, 2017
  • 14September, 2018
  • 13November, 2018
  • 6January, 2019
  • 6October, 2017
  • 5December, 2017
  • 5September, 2017
  • 3December, 2018
  • 1November, 2020
Available data
  • 2233bam
  • 2091bigWig
  • 1229tsv
  • 1089bed narrowPeak
  • 728fastq
  • 513bigBed narrowPeak
  • 256tagAlign
  • 197bed broadPeak
  • 166bed bed3+
  • 162bigBed broadPeak
  • 153txt
  • 153zippedFastqFolder
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1vcf
Organism
  • 507Homo sapiens
Biosample type
  • 479tissue
  • 32primary cell
  • 2cell line
Organ
  • 106brain
  • 85kidney
  • 82heart
  • 80limb
  • 74pancreas
  • 54blood vessel
  • 54vasculature
  • 38musculature of body
  • 26epithelium
  • 26nerve
  • 21artery
  • 18ureter
  • 15liver
  • 14connective tissue
  • 13spleen
  • 9adipose tissue
  • 2blood
  • 2bodily fluid
  • 1eye
  • 1vein
Project
  • 513AMP
Genome assembly (visualization)
  • 511GRCh38
  • 451hg19
Lab
  • 513AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 3missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

513 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
heart left ventricle272
kidney1811
tibial nerve242
body of pancreas194
heart714
primary cell
pancreatic beta cell7
pancreatic alpha cell6
pancreatic acinar cell5
pancreatic ductal cell4
cardiac fibroblast2
cell line
GM128782
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