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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 708ChIP-seq
  • 209DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 708DNA binding
  • 241DNA accessibility
Target of assay
  • 405transcription factor
  • 391histone
  • 391histone modification
  • 242broad histone mark
  • 149narrow histone mark
  • RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 277November, 2017
  • 206June, 2019
  • 92May, 2019
  • 70October, 2019
  • 61April, 2019
  • 52November, 2018
  • 46December, 2017
  • 40August, 2017
  • 34October, 2018
  • 28December, 2018
  • 15January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3289bam
  • 3063bigWig
  • 1712bed narrowPeak
  • 1600tsv
  • 1269fastq
  • 949bigBed narrowPeak
  • 398tagAlign
  • 313bed broadPeak
  • 276bigBed broadPeak
  • 271bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 943Homo sapiens
Biosample type
  • 541tissue
  • 294cell line
  • 99primary cell
  • 15in vitro differentiated cells
Organ
  • 303liver
  • 124brain
  • 102kidney
  • 88heart
  • 85pancreas
  • 84limb
  • 78vasculature
  • 75blood vessel
  • 69epithelium
  • 47musculature of body
  • 44blood
  • 44bodily fluid
  • 26nerve
  • 24artery
  • 22connective tissue
  • 18ureter
  • 13spleen
  • 13vein
  • 5adipose tissue
  • 5eye
Project
  • 949AMP
Genome assembly (visualization)
  • 910GRCh38
  • 871hg19
Lab
  • 949AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 21inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 6inconsistent control run_type
  • 3inconsistent assembly
target.investigated_as!
  • RNA binding protein
BIOSAMPLE
ASSAY

949 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver372
kidney18131
heart left ventricle253
tibial nerve242
body of pancreas214
cell line
HepG2242
GM1287844
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast122
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
mesenchymal stem cell6
in vitro differentiated cells
hepatocyte12
adipocyte12
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