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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 559ChIP-seq
  • 209DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 559DNA binding
  • 241DNA accessibility
Target of assay
  • 405transcription factor
  • 391histone
  • 391histone modification
  • broad histone mark
  • 149narrow histone mark
  • 93RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 267November, 2017
  • 202June, 2019
  • 73November, 2018
  • 40December, 2017
  • 39May, 2019
  • 32October, 2019
  • 30December, 2018
  • 27April, 2019
  • 26October, 2018
  • 24August, 2017
  • 17January, 2019
  • 14September, 2018
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
  • 1October, 2017
Available data
  • 3014bam
  • 2742bigWig
  • 1600tsv
  • 1397bed narrowPeak
  • 1240fastq
  • 800bigBed narrowPeak
  • 286bed broadPeak
  • 269bigBed broadPeak
  • 261bed bed3+
  • 251tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 798Homo sapiens
Biosample type
  • 357tissue
  • 345cell line
  • 88primary cell
  • 10in vitro differentiated cells
Organ
  • 337liver
  • 92kidney
  • 69brain
  • 62epithelium
  • 61pancreas
  • 60heart
  • 54blood
  • 54bodily fluid
  • 50limb
  • 42vasculature
  • 39musculature of body
  • 38blood vessel
  • 24connective tissue
  • 18ureter
  • 11artery
  • 10adipose tissue
  • 10nerve
  • 9spleen
  • 8vein
  • 6eye
Project
  • 800AMP
Genome assembly (visualization)
  • 757hg19
  • 756GRCh38
Lab
  • 800AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 16inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 9inconsistent control run_type
  • 1inconsistent assembly
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

800 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver342
kidney8131
heart218
body of pancreas154
muscle of arm17
cell line
HepG2286
GM1287854
Panc131
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast82
endothelial cell of umbilical vein521
pancreatic beta cell7
cardiac fibroblast33
pancreatic alpha cell6
in vitro differentiated cells
hepatocyte7
adipocyte12
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