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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 767ChIP-seq
  • 209DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 767DNA binding
  • 241DNA accessibility
Target of assay
  • 405transcription factor
  • 391histone
  • 391histone modification
  • 242broad histone mark
  • 149narrow histone mark
  • 93RNA binding protein
  • 81recombinant protein
  • chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 297November, 2017
  • 210June, 2019
  • 97May, 2019
  • 70October, 2019
  • 66November, 2018
  • 64April, 2019
  • 47December, 2017
  • 45October, 2018
  • 41August, 2017
  • 28December, 2018
  • 15January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3356bam
  • 3133bigWig
  • 1781bed narrowPeak
  • 1601tsv
  • 1322fastq
  • 1008bigBed narrowPeak
  • 398tagAlign
  • 317bed broadPeak
  • 280bigBed broadPeak
  • 274bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 1002Homo sapiens
Biosample type
  • 559tissue
  • 325cell line
  • 108primary cell
  • 16in vitro differentiated cells
Organ
  • 335liver
  • 127brain
  • 104kidney
  • 94heart
  • 91pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 75epithelium
  • 47musculature of body
  • 44blood
  • 44bodily fluid
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 1008AMP
Genome assembly (visualization)
  • 966GRCh38
  • 929hg19
Lab
  • 1008AMP-T2D consortium
Audit category:
  • 25inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 9missing controlled_by
Audit category:
  • 20inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • chromatin remodeller
BIOSAMPLE
ASSAY

1008 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver362
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
cell line
HepG2273
GM1287844
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast132
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte13
adipocyte12
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