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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 410ChIP-seq
  • 209DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 410DNA binding
  • 241DNA accessibility
Target of assay
  • 405transcription factor
  • 391histone
  • histone modification
  • 242broad histone mark
  • 149narrow histone mark
  • 93RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 239November, 2017
  • 191June, 2019
  • 73November, 2018
  • 33December, 2017
  • 30December, 2018
  • 15October, 2018
  • 14January, 2019
  • 14September, 2018
  • 12August, 2017
  • 12October, 2019
  • 5April, 2019
  • 5May, 2019
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 2607bam
  • 2300bigWig
  • 1600tsv
  • 1128fastq
  • 966bed narrowPeak
  • 651bigBed narrowPeak
  • 257bed broadPeak
  • 255bigBed broadPeak
  • 248bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 77tagAlign
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 651Homo sapiens
Biosample type
  • 335cell line
  • 249tissue
  • 62primary cell
  • 5in vitro differentiated cells
Organ
  • 323liver
  • 82kidney
  • 53blood
  • 53bodily fluid
  • 47epithelium
  • 42pancreas
  • 38heart
  • 36brain
  • 36limb
  • 33musculature of body
  • 19connective tissue
  • 18ureter
  • 17vasculature
  • 14blood vessel
  • 9adipose tissue
  • 7spleen
  • 5artery
  • 5eye
  • 3vein
  • 2nerve
Project
  • 651AMP
Genome assembly (visualization)
  • 624hg19
  • 608GRCh38
Lab
  • 651AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 11missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 8inconsistent control run_type
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

651 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2280
GM1287853
Panc11
glomerular visceral epithelial cell1
tissue
liver332
heart18
muscle of arm17
brain14
kidney131
primary cell
pancreatic beta cell7
pancreatic alpha cell6
pancreatic acinar cell5
cardiac fibroblast13
pancreatic ductal cell4
in vitro differentiated cells
adipocyte12
hepatocyte2
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