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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 652ChIP-seq
  • 209DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 652DNA binding
  • 241DNA accessibility
Target of assay
  • 405transcription factor
  • 391histone
  • 391histone modification
  • 242broad histone mark
  • narrow histone mark
  • 93RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 284November, 2017
  • 199June, 2019
  • 73November, 2018
  • 63May, 2019
  • 50October, 2019
  • 43December, 2017
  • 42April, 2019
  • 34October, 2018
  • 30August, 2017
  • 30December, 2018
  • 18January, 2019
  • 14September, 2018
  • 5October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 2987bam
  • 2729bigWig
  • 1601tsv
  • 1388bed narrowPeak
  • 1248fastq
  • 893bigBed narrowPeak
  • 293bed broadPeak
  • 271bigBed broadPeak
  • 261bed bed3+
  • 224tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tbi
  • 1vcf
Organism
  • 889Homo sapiens
Biosample type
  • 453tissue
  • 345cell line
  • 83primary cell
  • 12in vitro differentiated cells
Organ
  • 344liver
  • 94brain
  • 94kidney
  • 72heart
  • 72pancreas
  • 70limb
  • 61epithelium
  • 58vasculature
  • 55blood vessel
  • 53blood
  • 53bodily fluid
  • 41musculature of body
  • 23connective tissue
  • 19artery
  • 18nerve
  • 18ureter
  • 11spleen
  • 9adipose tissue
  • 8vein
  • 5eye
Project
  • 893AMP
Genome assembly (visualization)
  • 850GRCh38
  • 830hg19
Lab
  • 893AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 15inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

893 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver372
body of pancreas204
kidney10131
heart518
heart left ventricle203
cell line
HepG2287
GM1287853
Panc131
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast82
endothelial cell of umbilical vein521
pancreatic beta cell7
pancreatic alpha cell6
pancreatic acinar cell5
in vitro differentiated cells
hepatocyte9
adipocyte12
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