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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 396ChIP-seq
  • 209DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 396DNA binding
  • 241DNA accessibility
Target of assay
  • transcription factor
  • 391histone
  • 391histone modification
  • 242broad histone mark
  • 149narrow histone mark
  • 93RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 206June, 2019
  • 92May, 2019
  • 76November, 2017
  • 70October, 2019
  • 59April, 2019
  • 40August, 2017
  • 30October, 2018
  • 17December, 2017
  • 14September, 2018
  • 10November, 2018
  • 7January, 2019
  • 6October, 2017
  • 5September, 2017
  • 2December, 2018
  • 2July, 2019
  • 1November, 2020
Available data
  • 2907bam
  • 2673bigWig
  • 1600tsv
  • 1348bed narrowPeak
  • 904fastq
  • 637bigBed narrowPeak
  • 389tagAlign
  • 273bed broadPeak
  • 254bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 631Homo sapiens
Biosample type
  • 496tissue
  • 99primary cell
  • 27cell line
  • 15in vitro differentiated cells
Organ
  • 124brain
  • 102kidney
  • 86heart
  • 84limb
  • 81pancreas
  • 78vasculature
  • 75blood vessel
  • 69epithelium
  • 47musculature of body
  • 44liver
  • 26nerve
  • 24artery
  • 22connective tissue
  • 18ureter
  • 13vein
  • 7spleen
  • 5adipose tissue
  • 5eye
  • 3blood
  • 3bodily fluid
Project
  • 637AMP
Genome assembly (visualization)
  • 626GRCh38
  • 562hg19
Lab
  • 637AMP-T2D consortium
Audit category:
  • 21inconsistent ontology term
Audit category:
  • 4missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

637 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
kidney18131
heart left ventricle233
tibial nerve242
heart718
body of pancreas174
primary cell
skeletal muscle myoblast122
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
mesenchymal stem cell6
cell line
HepG216
Panc161
GM128783
glomerular visceral epithelial cell1
in vitro differentiated cells
hepatocyte12
adipocyte12
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