Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 391ChIP-seq
Assay category
  • 391DNA binding
Target of assay
  • 405transcription factor
  • 391histone
  • 391histone modification
  • 242broad histone mark
  • 149narrow histone mark
  • 93RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 92May, 2019
  • 73November, 2017
  • 59April, 2019
  • 58October, 2019
  • 30August, 2017
  • 30October, 2018
  • 19June, 2019
  • 17December, 2017
  • 7January, 2019
  • 6October, 2017
Available data
  • 869bigWig
  • 851bed narrowPeak
  • 785bam
  • 391bigBed narrowPeak
  • 321tagAlign
  • 230fastq
  • 65bed broadPeak
  • 30bigBed broadPeak
  • 25bed bed3+
  • 1tagAlign bed3+
Organism
  • 385Homo sapiens
Biosample type
  • 312tissue
  • 47primary cell
  • 20cell line
  • 12in vitro differentiated cells
Organ
  • 91brain
  • 66vasculature
  • 65blood vessel
  • 56heart
  • 49pancreas
  • 48limb
  • 35liver
  • 29epithelium
  • 24nerve
  • 22kidney
  • 20artery
  • 14musculature of body
  • 10vein
  • 9connective tissue
  • 6spleen
  • 1adipose tissue
  • 1blood
  • 1bodily fluid
  • 1eye
Project
  • 391AMP
Genome assembly (visualization)
  • 390GRCh38
  • 339hg19
Lab
  • 391AMP-T2D consortium
Audit category:
  • 17inconsistent ontology term
Audit category:
  • 4missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

391 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
tissue
tibial nerve24
heart left ventricle23
kidney18
tibial artery18
body of pancreas17
primary cell
skeletal muscle myoblast12
endothelial cell of umbilical vein10
skeletal muscle satellite cell7
mesenchymal stem cell6
kidney epithelial cell3
cell line
HepG213
Panc16
GM128781
in vitro differentiated cells
hepatocyte12
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego