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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 109ChIP-seq
  • 51ATAC-seq
  • 5GRO-seq
  • 5Hi-C
  • 2total RNA-seq
Assay category
  • 109DNA binding
  • 51DNA accessibility
  • 53D chromatin structure
  • 2Transcription
Target of assay
  • 90histone
  • 90histone modification
  • 53broad histone mark
  • 37narrow histone mark
  • 16transcription factor
  • 6RNA binding protein
  • 3control
Date released
  • 40May, 2021
  • 40May, 2024
  • 20August, 2017
  • 20May, 2022
  • 16August, 2021
  • 8January, 2018
  • 7August, 2020
  • 4July, 2019
  • 4March, 2020
  • 4October, 2019
  • 3February, 2023
  • 3September, 2020
  • 1April, 2019
  • 1November, 2017
  • 1October, 2017
Available data
  • bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1601tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 274bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 172Homo sapiens
Biosample type
  • 88tissue
  • 49primary cell
  • 18cell line
  • 16in vitro differentiated cells
  • 1stem cell
Organ
  • 41heart
  • 35liver
  • 22pancreas
  • 14epithelium
  • 14musculature of body
  • 8connective tissue
  • 4brain
  • 3adipose tissue
  • 2blood vessel
  • 2vasculature
  • 1blood
  • 1bodily fluid
  • 1embryo
Project
  • 162AMP
  • 10HPAP
Genome assembly (visualization)
  • 117hg19
  • 52GRCh38
  • 5hg18
Lab
  • 42AMP-T2D consortium
  • 40Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bam
BIOSAMPLE
ASSAY

172 results

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Clear Filters
ChIP-seq
ATAC-seq
GRO-seq
Hi-C
total RNA-seq
tissue
left cardiac atrium40
liver20
skeletal muscle tissue131
islet of Langerhans63
adipose tissue2
cingulate gyrus1
heart left ventricle1
subcutaneous abdominal adipose tissue1
primary cell
CD8-positive, alpha-beta T cell332
pancreatic alpha cell7
pancreatic beta cell3
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
endothelial cell of hepatic sinusoid1
cell line
HepG214
EndoC_BH12
GM128781
Panc11
in vitro differentiated cells
embryonic stem cell6
adipocyte3
Posterior foregut1
Progenitor cell of Hypothalamus (neural progenitor cell)1
definitive endodermal cell1
neuron cell of Hypothalamus (neuron)1
osteoblast1
pancreatic endoderm1
primitive gut cell1
stem cell
hESC1
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