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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 109ChIP-seq
  • 51ATAC-seq
  • 5GRO-seq
  • 5Hi-C
  • 2total RNA-seq
Assay category
  • 109DNA binding
  • 51DNA accessibility
  • 53D chromatin structure
  • 2Transcription
Target of assay
  • 90histone
  • 90histone modification
  • 53broad histone mark
  • 37narrow histone mark
  • 16transcription factor
  • 6RNA binding protein
  • 3control
Date released
  • 40May, 2021
  • 40May, 2024
  • 20August, 2017
  • 20May, 2022
  • 16August, 2021
  • 8January, 2018
  • 7August, 2020
  • 4July, 2019
  • 4March, 2020
  • 4October, 2019
  • 3February, 2023
  • 3September, 2020
  • 1April, 2019
  • 1November, 2017
  • 1October, 2017
Available data
  • bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 172Homo sapiens
Biosample type
  • 88tissue
  • 49primary cell
  • 18cell line
  • 16in vitro differentiated cells
  • 1stem cell
Organ
  • 41heart
  • 35liver
  • 22pancreas
  • 14epithelium
  • 14musculature of body
  • 8connective tissue
  • 4brain
  • 3adipose tissue
  • 2blood vessel
  • 2vasculature
  • 1blood
  • 1bodily fluid
  • 1embryo
Project
  • 162AMP
  • 10HPAP
Genome assembly (visualization)
  • 117hg19
  • 52GRCh38
  • 5hg18
Lab
  • 42AMP-T2D consortium
  • 40Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bam
BIOSAMPLE
ASSAY

172 results

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Clear Filters
ChIP-seq
ATAC-seq
GRO-seq
Hi-C
total RNA-seq
tissue
left cardiac atrium40
liver20
skeletal muscle tissue131
islet of Langerhans63
adipose tissue2
primary cell
CD8-positive, alpha-beta T cell332
pancreatic alpha cell7
pancreatic beta cell3
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cell line
HepG214
EndoC_BH12
GM128781
Panc11
in vitro differentiated cells
embryonic stem cell6
adipocyte3
Posterior foregut1
Progenitor cell of Hypothalamus (neural progenitor cell)1
definitive endodermal cell1
stem cell
hESC1
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