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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
12
ChIP-seq
1
GRO-seq
Assay category
14
Transcription
12
DNA binding
Target of assay
9
histone
9
histone modification
6
narrow histone mark
3
broad histone mark
3
transcription factor
Date released
10
February, 2018
8
August, 2021
6
December, 2017
2
May, 2021
1
January, 2018
Available data
36
bam
29
bigWig
27
fastq
14
bed narrowPeak
14
tsv
bed bed3+
Organism
27
Homo sapiens
Biosample type
19
in vitro differentiated cells
8
cell line
Organ
585
pancreas
577
liver
549
connective tissue
419
adipose tissue
270
epithelium
187
brain
154
heart
142
vasculature
139
blood vessel
81
artery
58
bone element
55
blood
55
bodily fluid
55
limb
53
kidney
35
musculature of body
29
nerve
27
embryo
15
spleen
13
vein
2
eye
1
pericardium
1
pituitary gland
Project
27
AMP
Genome assembly (visualization)
26
GRCh38
26
hg19
1
hg18
Lab
27
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
27 results
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total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
10
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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