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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
172
DNA binding
35
DNA accessibility
12
Transcription
3
3D chromatin structure
Target of assay
166
histone
166
histone modification
106
narrow histone mark
60
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
76
October, 2019
66
November, 2017
30
June, 2019
25
May, 2019
16
July, 2019
7
October, 2017
2
November, 2018
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
222
Homo sapiens
Biosample type
202
tissue
20
primary cell
Organ
621
liver
609
pancreas
568
connective tissue
423
adipose tissue
291
epithelium
222
brain
218
heart
154
vasculature
149
blood vessel
131
kidney
90
limb
85
artery
67
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
15
vein
14
spleen
6
eye
1
pericardium
1
pituitary gland
Project
222
AMP
Genome assembly (visualization)
214
GRCh38
159
hg19
Lab
222
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
files.file_type!
bed bedMethyl
bed bedgraph
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
222 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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