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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
340
ChIP-seq
8
ATAC-seq
Assay category
340
DNA binding
8
DNA accessibility
Target of assay
240
transcription factor
81
histone
81
histone modification
66
recombinant protein
50
broad histone mark
35
RNA binding protein
31
narrow histone mark
16
control
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
551
February, 2021
334
November, 2017
303
May, 2021
270
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
77
July, 2019
73
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
407
bam
348
bigWig
341
fastq
325
bed narrowPeak
318
bigBed narrowPeak
92
tagAlign
74
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
348
Homo sapiens
Biosample type
268
cell line
71
tissue
9
primary cell
Organ
268
liver
73
brain
6
epithelium
6
vasculature
5
pancreas
3
blood vessel
1
adipose tissue
1
connective tissue
1
spleen
Project
348
AMP
Genome assembly (visualization)
294
hg19
293
GRCh38
Lab
347
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
348 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
268
tissue
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
substantia nigra
11
brain
6
+ See 6 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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