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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
386
ChIP-seq
159
total RNA-seq
22
ATAC-seq
3
WGBS
3
small RNA-seq
1
Hi-C
Assay category
386
DNA binding
162
Transcription
22
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
295
transcription factor
81
recombinant protein
75
histone modification
74
histone
52
RNA binding protein
48
narrow histone mark
26
broad histone mark
19
chromatin remodeller
13
control
4
other context
4
other post-translational modification
Date released
210
November, 2017
170
May, 2020
54
November, 2018
50
December, 2017
20
May, 2022
18
August, 2017
17
August, 2021
11
January, 2019
8
July, 2019
6
October, 2019
5
December, 2019
3
December, 2018
1
March, 2020
1
October, 2017
Available data
705
bam
638
bigWig
489
fastq
455
bed narrowPeak
371
bigBed narrowPeak
175
tsv
86
tagAlign
bed broadPeak
64
bigBed broadPeak
14
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
574
Homo sapiens
Biosample type
277
tissue
274
cell line
14
in vitro differentiated cells
9
primary cell
Organ
603
pancreas
560
connective tissue
559
liver
422
adipose tissue
279
epithelium
194
heart
175
brain
138
vasculature
137
blood vessel
81
artery
58
bone element
55
blood
55
bodily fluid
55
limb
53
kidney
29
embryo
29
nerve
22
musculature of body
15
spleen
11
vein
2
eye
1
pericardium
1
pituitary gland
Project
574
AMP
Genome assembly (visualization)
567
hg19
494
GRCh38
Lab
540
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed broadPeak
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
574 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
small RNA-seq
Hi-C
tissue
liver
82
147
20
1
spleen
12
1
2
right lobe of liver
7
2
1
2
cell line
HepG2
268
5
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
endothelial cell of hepatic sinusoid
1
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