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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
157
DNA binding
12
Transcription
3
3D chromatin structure
3
DNA accessibility
Target of assay
154
histone
154
histone modification
98
narrow histone mark
56
broad histone mark
6
control
Date released
76
October, 2019
54
November, 2017
25
May, 2019
16
July, 2019
4
October, 2017
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
175
Homo sapiens
Biosample type
166
tissue
9
primary cell
Organ
559
liver
558
connective tissue
450
pancreas
422
adipose tissue
246
epithelium
194
heart
175
brain
138
vasculature
137
blood vessel
81
artery
58
bone element
55
blood
55
bodily fluid
55
limb
53
kidney
29
embryo
29
nerve
22
musculature of body
15
spleen
11
vein
2
eye
1
pericardium
1
pituitary gland
Project
175
AMP
Genome assembly (visualization)
168
GRCh38
122
hg19
Lab
175
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed broadPeak
month_released!
July, 2018
BIOSAMPLE
ASSAY
175 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
11
substantia nigra
11
+ See 65 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
Purkinje cell
1
brain pericyte
1
+ See 1 more…
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