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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1278total RNA-seq
  • 1276ChIP-seq
  • 135ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
  • 3DNase-seq
Assay category
  • 1402Transcription
  • 1276DNA binding
  • 143DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 804histone modification
  • 803histone
  • 447transcription factor
  • 411narrow histone mark
  • 391broad histone mark
  • 97RNA binding protein
  • 88recombinant protein
  • 31chromatin remodeller
  • 23control
  • 4other context
  • 4other post-translational modification
Date released
  • 551February, 2021
  • 303May, 2021
  • 264November, 2017
  • 260May, 2020
  • 231August, 2017
  • 198October, 2019
  • 164July, 2018
  • 97May, 2019
  • 85July, 2019
  • 72December, 2017
  • 72September, 2018
  • 71November, 2018
  • 65April, 2019
  • 49April, 2018
  • 47August, 2021
  • 47October, 2018
  • 40May, 2024
  • 31February, 2018
  • 31November, 2019
  • 30December, 2018
  • 26January, 2019
  • 23June, 2019
  • 20March, 2020
  • 20May, 2022
  • 10October, 2017
  • 8January, 2018
  • 7August, 2020
  • 5December, 2019
  • 5September, 2017
  • 4November, 2020
  • 3August, 2018
  • 3February, 2023
  • 3June, 2018
  • 3September, 2020
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2848Homo sapiens
Biosample type
  • 1560tissue
  • 564primary cell
  • 463cell line
  • 258in vitro differentiated cells
  • 3stem cell
Organ
  • 603pancreas
  • 560connective tissue
  • 559liver
  • 422adipose tissue
  • 279epithelium
  • 194heart
  • 175brain
  • 138vasculature
  • 137blood vessel
  • 81artery
  • 58bone element
  • 55blood
  • 55bodily fluid
  • 55limb
  • 53kidney
  • 29embryo
  • 29nerve
  • 22musculature of body
  • 15spleen
  • 11vein
  • 2eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2652AMP
  • 186T1D
  • 10HPAP
Genome assembly (visualization)
  • 2718hg19
  • 2648GRCh38
  • 5hg18
Lab
  • 2539AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
Audit category:
  • 188inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 84missing controlled_by
Audit category:
  • 43inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
files.file_type!
  • bed broadPeak
BIOSAMPLE
ASSAY

2848 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
DNase-seq
tissue
adipose tissue381122
islet of Langerhans260232611
liver14782201
bone tissue58
left cardiac atrium40
primary cell
monocyte53842
pancreatic alpha cell1071312
CD8-positive, alpha-beta T cell4332
pancreatic beta cell1071012
pancreatic ductal cell413410
cell line
HepG252681
smooth muscle cell of the coronary artery524
GM12878541
EndoC_BH133132
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4473
neural progenitor cell713
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm4121
stem cell
hESC21
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