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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
7
ATAC-seq
3
ChIP-seq
Assay category
98
Transcription
7
DNA accessibility
3
DNA binding
Target of assay
3
control
Date released
61
May, 2021
45
May, 2020
1
February, 2023
1
October, 2017
Available data
300
bigWig
bed narrowPeak
205
bam
126
fastq
106
tsv
84
tagAlign
73
zippedFastqFolder
66
txt
64
xls
4
bed bed3+
4
hic
3
bed bedgraph
2
bed broadPeak
2
bedpe bed3+
1
bedpe
1
vcf
Organism
108
Homo sapiens
Biosample type
101
primary cell
6
in vitro differentiated cells
1
tissue
Organ
11
pancreas
epithelium
Project
96
T1D
12
AMP
Genome assembly (visualization)
108
hg19
97
GRCh38
Lab
AMP-T2D consortium
106
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
1
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
files.file_type!
bed narrowPeak
files.file_type!!
bed narrowPeak
lab.title!
AMP-T2D consortium
organ_slims!
epithelium
BIOSAMPLE
ASSAY
108 results
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total RNA-seq
ATAC-seq
ChIP-seq
primary cell
monocyte
53
CD8-positive, alpha-beta T cell
4
3
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 20 more…
in vitro differentiated cells
embryonic stem cell
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
tissue
islet of Langerhans
1
See all biosamples
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