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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
12
ChIP-seq
3
small RNA-seq
2
ATAC-seq
2
WGBS
Assay category
398
Transcription
12
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
12
transcription factor
Date released
386
February, 2021
14
August, 2017
12
July, 2019
1
January, 2018
1
October, 2019
Available data
442
bam
425
bigWig
401
tsv
44
fastq
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
414
Homo sapiens
Biosample type
412
tissue
2
primary cell
Organ
498
connective tissue
447
pancreas
414
adipose tissue
183
liver
164
epithelium
76
heart
65
vasculature
64
blood vessel
58
bone element
54
artery
20
brain
15
embryo
12
kidney
8
musculature of body
5
limb
4
nerve
2
spleen
2
vein
1
blood
1
bodily fluid
1
pericardium
Project
414
AMP
Genome assembly (visualization)
412
GRCh38
412
hg19
Lab
414
AMP-T2D consortium
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
bedpe
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
414 results
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total RNA-seq
ChIP-seq
small RNA-seq
ATAC-seq
WGBS
tissue
adipose tissue
381
2
2
white adipose tissue
12
subcutaneous adipose tissue
6
1
omental fat pad
4
1
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
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