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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
total RNA-seq
80
single cell RNA-seq
21
ChIP-seq
15
ATAC-seq
4
WGBS
2
small RNA-seq
1
Hi-C
Assay category
406
Transcription
21
DNA binding
15
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
15
histone
15
histone modification
10
narrow histone mark
6
transcription factor
5
broad histone mark
1
RNA binding protein
Date released
153
July, 2018
110
August, 2017
40
May, 2021
39
April, 2018
26
February, 2021
26
September, 2018
20
November, 2019
7
August, 2020
7
March, 2020
4
July, 2019
4
November, 2018
3
August, 2018
3
September, 2020
2
October, 2018
1
June, 2018
1
October, 2017
1
October, 2019
Available data
689
bam
623
bigWig
471
fastq
417
tsv
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
447
Homo sapiens
Biosample type
287
tissue
124
primary cell
36
cell line
Organ
498
connective tissue
447
pancreas
414
adipose tissue
183
liver
164
epithelium
76
heart
65
vasculature
64
blood vessel
58
bone element
54
artery
20
brain
15
embryo
12
kidney
8
musculature of body
5
limb
4
nerve
2
spleen
2
vein
1
blood
1
bodily fluid
1
pericardium
Project
435
AMP
10
HPAP
2
T1D
Genome assembly (visualization)
443
GRCh38
433
hg19
Lab
436
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
40
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
bed narrowPeak
ibed
files.file_type!!
ibed
BIOSAMPLE
ASSAY
447 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
Hi-C
tissue
islet of Langerhans
260
6
9
3
body of pancreas
2
2
2
pancreas
1
2
primary cell
pancreatic alpha cell
10
12
7
pancreatic beta cell
10
12
3
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic endocrine cell
12
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cell line
EndoC_BH1
33
2
Panc1
1
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