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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
217
total RNA-seq
19
ChIP-seq
3
small RNA-seq
1
Hi-C
1
WGBS
Assay category
220
Transcription
19
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
13
control
4
transcription factor
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
Date released
143
May, 2020
58
February, 2021
19
November, 2017
8
July, 2019
5
December, 2019
5
January, 2019
1
March, 2020
1
November, 2018
1
October, 2019
Available data
747
bam
680
bigWig
465
fastq
bed narrowPeak
358
bigBed narrowPeak
232
tsv
88
txt
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
5
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
vcf
Organism
241
Homo sapiens
Biosample type
210
tissue
25
cell line
6
primary cell
Organ
498
connective tissue
447
pancreas
414
adipose tissue
183
liver
164
epithelium
76
heart
65
vasculature
64
blood vessel
58
bone element
54
artery
20
brain
15
embryo
12
kidney
8
musculature of body
5
limb
4
nerve
2
spleen
2
vein
1
blood
1
bodily fluid
1
pericardium
Project
241
AMP
Genome assembly (visualization)
240
hg19
221
GRCh38
Lab
241
AMP-T2D consortium
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
vcf
BIOSAMPLE
ASSAY
241 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
Hi-C
WGBS
tissue
liver
147
1
bone tissue
58
right lobe of liver
2
2
cell line
HepG2
5
19
1
primary cell
hepatocyte
5
endothelial cell of hepatic sinusoid
1
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