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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
single cell RNA-seq
45
total RNA-seq
12
ATAC-seq
4
ChIP-seq
2
Hi-C
Assay category
115
Transcription
12
DNA accessibility
4
DNA binding
2
3D chromatin structure
Target of assay
2
broad histone mark
2
control
2
histone
2
histone modification
Date released
33
April, 2018
33
July, 2018
26
February, 2021
September, 2018
7
August, 2020
7
July, 2019
6
May, 2021
December, 2019
5
October, 2019
4
March, 2020
3
August, 2018
3
September, 2020
2
November, 2017
2
October, 2018
1
June, 2018
1
November, 2019
Available data
251
bam
235
bigWig
196
fastq
124
tsv
bed narrowPeak
80
zippedFastqFolder
62
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
133
Homo sapiens
Biosample type
95
primary cell
36
cell line
2
in vitro differentiated cells
Organ
498
connective tissue
421
pancreas
414
adipose tissue
178
liver
133
epithelium
76
heart
65
vasculature
64
blood vessel
58
bone element
54
artery
20
brain
15
embryo
12
kidney
8
musculature of body
5
limb
4
nerve
2
spleen
2
vein
1
blood
1
bodily fluid
1
pericardium
Project
121
AMP
10
HPAP
2
T1D
Genome assembly (visualization)
125
GRCh38
123
hg19
Lab
123
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
37
inconsistent ontology term
files.file_type!
bed narrowPeak
month_released!
December, 2019
September, 2018
BIOSAMPLE
ASSAY
133 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
12
7
pancreatic beta cell
12
3
pancreatic acinar cell
12
2
pancreatic delta cell
11
pancreatic ductal cell
10
+ See 14 more…
cell line
EndoC_BH1
33
2
glomerular visceral epithelial cell
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
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