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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1278total RNA-seq
  • 106single cell RNA-seq
  • 74ATAC-seq
  • 66ChIP-seq
  • 18small RNA-seq
  • 17WGBS
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1402Transcription
  • 74DNA accessibility
  • 66DNA binding
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 27transcription factor
  • 23control
  • 19histone
  • 19histone modification
  • 11narrow histone mark
  • 8broad histone mark
  • 1RNA binding protein
Date released
  • 545February, 2021
  • 233May, 2020
  • 183May, 2021
  • 164July, 2018
  • 130August, 2017
  • 78July, 2019
  • 49April, 2018
  • 26September, 2018
  • 22November, 2017
  • 22October, 2019
  • 20November, 2019
  • 17March, 2020
  • 15August, 2021
  • 15February, 2018
  • 8January, 2018
  • 7August, 2020
  • 7November, 2018
  • 5December, 2019
  • 5January, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2October, 2017
  • 2October, 2018
  • 1February, 2023
Available data
  • 3392bam
  • 3169bigWig
  • bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1569Homo sapiens
Biosample type
  • 962tissue
  • 334primary cell
  • 144in vitro differentiated cells
  • 128cell line
  • 1stem cell
Organ
  • 498connective tissue
  • 447pancreas
  • 414adipose tissue
  • 183liver
  • 164epithelium
  • 76heart
  • 65vasculature
  • 64blood vessel
  • 58bone element
  • 54artery
  • 20brain
  • 15embryo
  • 12kidney
  • 8musculature of body
  • 5limb
  • 4nerve
  • 2spleen
  • 2vein
  • 1blood
  • 1bodily fluid
  • 1pericardium
Project
  • 1461AMP
  • 98T1D
  • 10HPAP
Genome assembly (visualization)
  • 1535hg19
  • 1469GRCh38
  • 5hg18
Lab
  • 1451AMP-T2D consortium
  • 106Kyle Gaulton, UCSD
  • 10Klaus Kaestner, Upenn
  • 1Stephen Parker, UMich
  • 1Struan F.A. Grant, CHOP
Audit category:
  • 140inconsistent ontology term
Audit category:
  • 38missing controlled_by
Audit category:
  • 2inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

1569 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
small RNA-seq
WGBS
GRO-seq
Hi-C
tissue
adipose tissue38122
islet of Langerhans260639
liver1471
bone tissue58
white adipose tissue12
primary cell
monocyte532
pancreatic alpha cell10127
pancreatic beta cell10123
pancreatic acinar cell412
pancreatic ductal cell410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
adipocyte425
induced pluripotent stem cell9
embryonic stem cell25
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1332
HepG25191
H1-hESC8
early embryonic cell2
stem cell
hESC1
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