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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
168
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
chromatin remodeller
1
control
Date released
495
February, 2021
316
November, 2017
303
May, 2021
269
August, 2017
260
May, 2020
205
June, 2019
171
October, 2019
164
July, 2018
75
July, 2019
73
November, 2018
72
September, 2018
69
December, 2017
65
April, 2019
58
May, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
28
December, 2018
20
January, 2019
20
May, 2022
19
March, 2020
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
284
fastq
279
bam
269
bigWig
139
bed narrowPeak
89
tsv
85
tagAlign
41
bigBed narrowPeak
40
bed broadPeak
33
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
263
Homo sapiens
Biosample type
178
tissue
46
in vitro differentiated cells
45
primary cell
Organ
159
pancreas
63
connective tissue
18
liver
17
adipose tissue
17
epithelium
13
musculature of body
Project
269
AMP
Genome assembly (visualization)
267
hg19
244
GRCh38
Lab
269
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
14
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bedpe
organ_slims!
blood vessel
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
269 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
white adipose tissue
12
+ See 4 more…
in vitro differentiated cells
adipocyte
45
1
primary cell
skeletal muscle myoblast
14
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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