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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
13
total RNA-seq
5
ATAC-seq
1
Hi-C
Assay category
158
DNA binding
13
Transcription
5
DNA accessibility
1
3D chromatin structure
Target of assay
151
histone
151
histone modification
109
narrow histone mark
42
broad histone mark
7
recombinant protein
7
transcription factor
Date released
525
February, 2021
294
May, 2021
268
November, 2017
260
May, 2020
240
August, 2017
177
October, 2019
131
July, 2018
93
May, 2019
78
July, 2019
71
November, 2018
65
April, 2019
56
December, 2017
45
October, 2018
44
August, 2021
40
May, 2024
31
February, 2018
30
December, 2018
26
January, 2019
19
June, 2019
19
November, 2019
16
April, 2018
15
March, 2020
14
October, 2017
11
September, 2018
8
January, 2018
4
November, 2020
3
February, 2023
2
June, 2018
Available data
218
bam
182
bigWig
168
bed narrowPeak
56
bigBed narrowPeak
49
tagAlign
13
tsv
6
bed bed3+
5
bed broadPeak
bigBed broadPeak
3
bedpe bed3+
3
hic
1
hdf5
1
tagAlign bed3+
Organism
177
Homo sapiens
Biosample type
156
tissue
17
cell line
4
in vitro differentiated cells
Organ
76
brain
48
limb
30
blood vessel
30
vasculature
29
nerve
22
kidney
epithelium
19
artery
11
vein
7
heart
7
pancreas
6
liver
3
connective tissue
1
adipose tissue
1
pituitary gland
Project
177
AMP
Genome assembly (visualization)
177
hg19
174
GRCh38
Lab
177
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bigBed broadPeak
lab.title!
Karen Mohlke, UNC
organ_slims!
epithelium
BIOSAMPLE
ASSAY
177 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
tissue
tibial nerve
24
4
1
tibial artery
18
1
heart
5
2
brain
5
1
liver
5
1
+ See 75 more…
cell line
Panc1
6
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
in vitro differentiated cells
adipocyte
2
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
See all biosamples
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