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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
14
total RNA-seq
2
WGBS
1
ATAC-seq
1
GRO-seq
Assay category
14
DNA binding
14
Transcription
2
DNA methylation
1
DNA accessibility
Target of assay
11
histone
11
histone modification
7
narrow histone mark
4
broad histone mark
3
transcription factor
Date released
10
February, 2018
8
August, 2021
8
December, 2017
2
May, 2021
2
November, 2018
1
January, 2018
1
October, 2017
Available data
60
bam
51
fastq
45
bigWig
28
bed narrowPeak
15
tsv
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
Organism
32
Homo sapiens
Biosample type
21
in vitro differentiated cells
8
cell line
3
tissue
Organ
542
connective tissue
525
pancreas
415
adipose tissue
264
liver
218
epithelium
130
heart
96
brain
72
vasculature
71
blood vessel
60
artery
58
bone element
29
embryo
27
kidney
21
musculature of body
7
limb
5
nerve
3
spleen
2
vein
1
blood
1
bodily fluid
1
pericardium
1
pituitary gland
Project
32
AMP
Genome assembly (visualization)
31
GRCh38
29
hg19
1
hg18
Lab
32
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
3
inconsistent control read length
files.file_type!
bigBed narrowPeak
month_released!
August, 2020
BIOSAMPLE
ASSAY
32 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
12
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
tissue
spleen
2
1
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