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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1278total RNA-seq
  • 590ChIP-seq
  • 109ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1402Transcription
  • 590DNA binding
  • 109DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 479histone modification
  • 478histone
  • 291narrow histone mark
  • 186broad histone mark
  • 91transcription factor
  • 23control
  • 13RNA binding protein
  • 7recombinant protein
  • 2chromatin remodeller
Date released
  • 551February, 2021
  • 303May, 2021
  • 260May, 2020
  • 230August, 2017
  • 164July, 2018
  • 137October, 2019
  • 83July, 2019
  • 58September, 2018
  • 49April, 2018
  • 47August, 2021
  • 40May, 2024
  • 31February, 2018
  • 31November, 2019
  • 23November, 2017
  • 22December, 2017
  • 20March, 2020
  • 20May, 2022
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 7November, 2018
  • 5December, 2019
  • 5January, 2019
  • 4November, 2020
  • 3August, 2018
  • 3February, 2023
  • 3June, 2018
  • 3September, 2020
  • 2October, 2018
  • 1April, 2019
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2128Homo sapiens
Biosample type
  • 1212tissue
  • 504primary cell
  • 242in vitro differentiated cells
  • 167cell line
  • 3stem cell
Organ
  • 542connective tissue
  • 532pancreas
  • 415adipose tissue
  • 264liver
  • 225epithelium
  • 130heart
  • 96brain
  • 72vasculature
  • 71blood vessel
  • 60artery
  • 58bone element
  • 29embryo
  • 27kidney
  • 21musculature of body
  • 7limb
  • 5nerve
  • 3spleen
  • 2vein
  • 1blood
  • 1bodily fluid
  • 1pericardium
  • 1pituitary gland
Project
  • 1932AMP
  • 186T1D
  • 10HPAP
Genome assembly (visualization)
  • 2053hg19
  • 1933GRCh38
  • 5hg18
Lab
  • 1818AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 168inconsistent ontology term
Audit category:
  • 71missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

2128 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
GRO-seq
Hi-C
tissue
adipose tissue38112
islet of Langerhans2602936
liver14744201
bone tissue58
left cardiac atrium40
primary cell
monocyte53842
CD8-positive, alpha-beta T cell4332
pancreatic alpha cell107712
pancreatic beta cell107312
pancreatic ductal cell41310
in vitro differentiated cells
cardiomyocytes593
adipocyte4471
neural progenitor cell713
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm4121
cell line
smooth muscle cell of the coronary artery524
EndoC_BH133132
HepG25331
H1-hESC8
RCC 7860 HIF1a re-expression13
stem cell
hESC21
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