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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1139total RNA-seq
  • 691ChIP-seq
  • 197DNase-seq
  • 94ATAC-seq
  • 18small RNA-seq
  • 8WGBS
  • 8single cell RNA-seq
  • 5Hi-C
  • 3FAIRE-seq
Assay category
  • 1165Transcription
  • 691DNA binding
  • 294DNA accessibility
  • 8DNA methylation
  • 53D chromatin structure
Target of assay
  • 641histone
  • 641histone modification
  • 331narrow histone mark
  • 310broad histone mark
  • 47transcription factor
  • 19RNA binding protein
  • 7recombinant protein
  • 6control
Date released
  • 551February, 2021
  • 303May, 2021
  • 260May, 2020
  • 210June, 2019
  • 207October, 2019
  • 114July, 2018
  • 97May, 2019
  • 85July, 2019
  • 65April, 2019
  • 57November, 2017
  • 47August, 2021
  • 40May, 2024
  • 31November, 2019
  • 21August, 2017
  • 20March, 2020
  • 20May, 2022
  • 14October, 2018
  • 5April, 2018
  • 5December, 2019
  • 5November, 2020
  • 3February, 2023
  • 3January, 2018
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2163Homo sapiens
Biosample type
  • 1493tissue
  • 378primary cell
  • 150cell line
  • 142in vitro differentiated cells
Organ
  • 496connective tissue
  • 402adipose tissue
  • 266pancreas
  • 229liver
  • 224heart
  • 204brain
  • 149vasculature
  • 147blood vessel
  • 131kidney
  • 118epithelium
  • 91limb
  • 85artery
  • 68musculature of body
  • 58bone element
  • 31nerve
  • 18ureter
  • 15vein
  • 10embryo
  • 6eye
  • 1blood
  • 1bodily fluid
  • 1pericardium
  • 1pituitary gland
Project
  • 1977AMP
  • 186T1D
Genome assembly (visualization)
  • 2039hg19
  • 1988GRCh38
Lab
  • 1864AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 5Struan F.A. Grant, CHOP
Audit category:
  • 183inconsistent ontology term
Audit category:
  • 1inconsistent assembly
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

2163 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
Hi-C
FAIRE-seq
tissue
adipose tissue3812
liver14732201
islet of Langerhans16982
bone tissue58
left cardiac atrium401
primary cell
monocyte53842
CD8-positive, alpha-beta T cell4332
endothelial cell of umbilical vein1221
epithelial cell of proximal tubule181
hepatocyte531
cell line
smooth muscle cell of the coronary artery524
EndoC_BH133132
HepG214
H1-hESC8
Panc1611
in vitro differentiated cells
cardiomyocytes593
neural progenitor cell713
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
adipocyte43
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