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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
391
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
391
DNA binding
10
DNA accessibility
7
DNA methylation
Target of assay
301
transcription factor
81
recombinant protein
73
histone
73
histone modification
54
RNA binding protein
45
broad histone mark
28
narrow histone mark
22
chromatin remodeller
14
control
5
other context
5
other post-translational modification
Date released
525
February, 2021
328
November, 2017
294
May, 2021
260
May, 2020
255
August, 2017
192
June, 2019
181
October, 2019
131
July, 2018
93
May, 2019
80
November, 2018
76
July, 2019
65
April, 2019
56
December, 2017
45
October, 2018
44
August, 2021
40
May, 2024
31
February, 2018
30
December, 2018
26
January, 2019
20
May, 2022
19
November, 2019
16
April, 2018
15
March, 2020
14
October, 2017
11
September, 2018
8
January, 2018
5
November, 2020
3
February, 2023
2
June, 2018
Available data
473
bam
408
bigWig
406
fastq
382
bed narrowPeak
381
bigBed narrowPeak
78
tagAlign
75
bed broadPeak
69
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
408
Homo sapiens
Biosample type
325
cell line
80
tissue
3
primary cell
Organ
320
liver
68
brain
12
blood
12
bodily fluid
7
pancreas
epithelium
6
spleen
6
vasculature
3
blood vessel
1
adipose tissue
1
connective tissue
Project
408
AMP
Genome assembly (visualization)
354
GRCh38
346
hg19
Lab
408
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
files.file_type!
hdf5
organ_slims!
epithelium
BIOSAMPLE
ASSAY
408 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
cell line
HepG2
312
1
GM12878
12
tissue
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
substantia nigra
11
cingulate gyrus
6
+ See 8 more…
primary cell
astrocyte of the cerebellum
3
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