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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
19
ChIP-seq
4
DNase-seq
2
ATAC-seq
Assay category
53
Transcription
19
DNA binding
6
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
56
February, 2021
17
October, 2019
2
July, 2019
2
June, 2019
1
May, 2019
Available data
95
bam
78
bigWig
68
bed narrowPeak
57
tsv
19
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
78
Homo sapiens
Biosample type
56
cell line
21
tissue
1
primary cell
Organ
569
liver
553
pancreas
551
connective tissue
423
adipose tissue
epithelium
184
heart
128
vasculature
124
blood vessel
116
kidney
113
brain
79
artery
77
limb
58
bone element
57
musculature of body
54
blood
54
bodily fluid
23
nerve
22
embryo
18
ureter
14
spleen
10
vein
5
eye
1
pericardium
Project
78
AMP
Genome assembly (visualization)
78
GRCh38
78
hg19
Lab
78
AMP-T2D consortium
files.file_type!
hdf5
organ_slims!
epithelium
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
78 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
cell line
smooth muscle cell of the coronary artery
52
4
tissue
tibial artery
14
2
1
coronary artery
1
2
1
primary cell
smooth muscle cell of the coronary artery
1
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