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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
14
total RNA-seq
4
DNase-seq
1
GRO-seq
Assay category
16
DNA binding
14
Transcription
4
DNA accessibility
Target of assay
12
histone
12
histone modification
8
narrow histone mark
4
broad histone mark
4
transcription factor
1
RNA binding protein
Date released
10
February, 2018
8
August, 2021
8
December, 2017
6
June, 2019
2
May, 2021
1
January, 2018
Available data
47
bed narrowPeak
43
bam
35
bigWig
27
fastq
19
tsv
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
35
Homo sapiens
Biosample type
21
in vitro differentiated cells
8
cell line
3
primary cell
3
tissue
Organ
609
pancreas
580
liver
569
connective tissue
424
adipose tissue
296
epithelium
220
heart
151
vasculature
146
blood vessel
140
brain
131
kidney
91
limb
81
artery
58
bone element
55
blood
55
bodily fluid
55
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
Project
35
AMP
Genome assembly (visualization)
34
GRCh38
34
hg19
1
hg18
Lab
35
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
3
inconsistent control read length
files.file_type!
tagAlign
xls
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
total RNA-seq
DNase-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
12
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
retinal pigment epithelial cell
2
1
tissue
retina
3
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