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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
33
ChIP-seq
5
ATAC-seq
Assay category
98
Transcription
33
DNA binding
5
DNA accessibility
Target of assay
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
3
control
Date released
91
May, 2021
45
May, 2020
Available data
220
bigWig
204
bam
132
bed narrowPeak
96
tsv
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
136
Homo sapiens
Biosample type
131
primary cell
5
in vitro differentiated cells
Project
96
T1D
40
AMP
Genome assembly (visualization)
136
hg19
96
GRCh38
Lab
2665
AMP-T2D consortium
136
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
Bing Ren, UCSD
10
Klaus Kaestner, Upenn
5
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
files.file_type!
tagAlign
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
136 results
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total RNA-seq
ChIP-seq
ATAC-seq
primary cell
monocyte
53
CD8-positive, alpha-beta T cell
4
33
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
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in vitro differentiated cells
embryonic stem cell
5
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