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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
21
ChIP-seq
4
DNase-seq
2
ATAC-seq
Assay category
54
Transcription
21
DNA binding
6
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
52
February, 2021
21
October, 2019
3
July, 2019
3
May, 2019
2
June, 2019
Available data
102
bam
85
bigWig
74
bed narrowPeak
58
tsv
25
bigBed narrowPeak
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
81
Homo sapiens
Biosample type
52
cell line
27
tissue
2
primary cell
Organ
pancreas
580
liver
569
connective tissue
424
adipose tissue
296
epithelium
220
heart
151
vasculature
146
blood vessel
140
brain
131
kidney
91
limb
81
artery
58
bone element
55
blood
55
bodily fluid
55
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
Project
81
AMP
Genome assembly (visualization)
81
GRCh38
81
hg19
Lab
81
AMP-T2D consortium
files.file_type!
tagAlign
organ_slims!
pancreas
BIOSAMPLE
ASSAY
81 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
cell line
smooth muscle cell of the coronary artery
52
tissue
tibial artery
18
2
1
coronary artery
3
2
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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