Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
14
ChIP-seq
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
Assay category
34
DNA accessibility
14
DNA binding
6
Transcription
1
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
Date released
41
June, 2019
6
May, 2019
5
July, 2019
2
March, 2020
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
55
Homo sapiens
Biosample type
44
tissue
11
primary cell
Organ
609
pancreas
580
liver
569
connective tissue
424
adipose tissue
296
epithelium
220
heart
151
vasculature
146
blood vessel
140
brain
131
kidney
91
limb
81
artery
58
bone element
55
blood
55
bodily fluid
55
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
0
skin of body
Project
55
AMP
Genome assembly (visualization)
54
hg19
53
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
55 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
tissue
muscle of leg
13
6
1
muscle of arm
17
skeletal muscle tissue
1
1
1
psoas muscle
2
forelimb muscle
1
+ See 1 more…
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
See all biosamples
Download