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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1390ChIP-seq
  • 209DNase-seq
  • 134ATAC-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
  • 2total RNA-seq
Assay category
  • 1390DNA binding
  • 348DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
  • 2Transcription
Target of assay
  • 869histone modification
  • 868histone
  • 496transcription factor
  • 440narrow histone mark
  • 427broad histone mark
  • 106RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 20control
  • 5other context
  • 5other post-translational modification
Date released
  • 334November, 2017
  • 210June, 2019
  • 191October, 2019
  • 183August, 2017
  • 130May, 2021
  • 97May, 2019
  • 80November, 2018
  • 72December, 2017
  • 72May, 2020
  • 65April, 2019
  • 46September, 2018
  • 45October, 2018
  • 40May, 2024
  • 32August, 2021
  • 30December, 2018
  • 21January, 2019
  • 20July, 2019
  • 20May, 2022
  • 16February, 2018
  • 14October, 2017
  • 11November, 2019
  • 8January, 2018
  • 7August, 2020
  • 6February, 2021
  • 5March, 2020
  • 5September, 2017
  • 3February, 2023
  • 3September, 2020
  • 1November, 2020
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1761Homo sapiens
Biosample type
  • 854tissue
  • 417cell line
  • 361primary cell
  • 132in vitro differentiated cells
  • 3stem cell
Organ
  • 460liver
  • 215pancreas
  • 210brain
  • 154epithelium
  • 154heart
  • 119kidney
  • 97vasculature
  • 96connective tissue
  • 92blood vessel
  • 87limb
  • 62musculature of body
  • 55blood
  • 55bodily fluid
  • 31artery
  • 27adipose tissue
  • 27nerve
  • 18ureter
  • 16spleen
  • 15embryo
  • 15vein
  • 6eye
  • 1pituitary gland
Project
  • 1669AMP
  • 88T1D
  • 10HPAP
Genome assembly (visualization)
  • 1614hg19
  • 1530GRCh38
  • 5hg18
Lab
  • 1553AMP-T2D consortium
  • 124Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 57inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

1767 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
total RNA-seq
tissue
liver82220
left cardiac atrium401
body of pancreas26442
heart left ventricle29322
kidney20131
cell line
HepG23261
GM12878541
EndoC_BH1131
Panc1611
smooth muscle cell of the coronary artery4
primary cell
monocyte842
CD8-positive, alpha-beta T cell3322
pancreatic endocrine cell23
pancreatic alpha cell713
pancreatic beta cell710
in vitro differentiated cells
adipocyte4713
hepatocyte14
neural progenitor cell13
pancreatic endoderm121
embryonic stem cell26
stem cell
hESC21
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