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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
434
ChIP-seq
217
total RNA-seq
21
ATAC-seq
9
DNase-seq
3
small RNA-seq
1
Hi-C
1
WGBS
Assay category
434
DNA binding
220
Transcription
30
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
334
transcription factor
84
histone modification
83
histone
81
recombinant protein
57
RNA binding protein
53
narrow histone mark
30
broad histone mark
23
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
170
May, 2020
58
February, 2021
52
November, 2018
50
December, 2017
20
May, 2022
18
August, 2017
17
August, 2021
8
July, 2019
8
June, 2019
6
October, 2019
5
December, 2019
5
January, 2019
1
March, 2020
Available data
754
bam
686
bigWig
482
bed narrowPeak
465
fastq
364
bigBed narrowPeak
237
tsv
txt
86
tagAlign
67
bed broadPeak
67
bigBed broadPeak
17
bed bed3+
5
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
686
Homo sapiens
Biosample type
332
cell line
326
tissue
14
in vitro differentiated cells
14
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
686
AMP
Genome assembly (visualization)
681
hg19
592
GRCh38
Lab
652
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
txt
BIOSAMPLE
ASSAY
686 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
tissue
liver
82
147
20
2
1
bone tissue
58
right lobe of liver
7
2
1
1
2
retina
3
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
retinal pigment epithelial cell
2
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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