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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
73
ChIP-seq
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
73
DNA binding
7
DNA accessibility
2
DNA methylation
Target of assay
68
transcription factor
15
RNA binding protein
10
chromatin remodeller
3
histone
3
histone modification
3
narrow histone mark
Date released
386
February, 2021
27
December, 2018
17
August, 2017
15
January, 2019
13
November, 2018
12
July, 2019
5
October, 2018
2
January, 2018
1
June, 2019
1
October, 2017
1
October, 2019
Available data
502
bam
480
bigWig
401
tsv
104
fastq
67
bed narrowPeak
64
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
480
Homo sapiens
Biosample type
423
tissue
55
cell line
2
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
480
AMP
Genome assembly (visualization)
478
hg19
476
GRCh38
Lab
480
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
12
missing controlled_by
files.file_type!
vcf
BIOSAMPLE
ASSAY
480 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
381
1
2
2
white adipose tissue
12
omental fat pad
4
3
1
1
2
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
cell line
GM12878
54
1
primary cell
mesenchymal stem cell of adipose
1
1
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