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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
14
total RNA-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
GRO-seq
Assay category
26
DNA binding
14
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
17
histone
17
histone modification
9
narrow histone mark
9
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
Date released
10
February, 2018
8
August, 2021
8
December, 2017
6
January, 2019
6
November, 2018
3
December, 2018
2
May, 2021
1
January, 2018
1
October, 2017
Available data
60
bam
51
fastq
45
bigWig
28
bed narrowPeak
15
tsv
13
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
Organism
45
Homo sapiens
Biosample type
21
in vitro differentiated cells
16
tissue
8
cell line
Organ
614
pancreas
566
liver
560
connective tissue
420
adipose tissue
293
epithelium
219
brain
213
heart
150
vasculature
146
blood vessel
129
kidney
91
limb
84
artery
68
musculature of body
58
bone element
45
blood
45
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
5
eye
1
pericardium
1
pituitary gland
Project
45
AMP
Genome assembly (visualization)
44
GRCh38
42
hg19
1
hg18
Lab
45
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
3
inconsistent control read length
files.file_type!
zippedFastqFolder
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
45 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
12
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
spleen
12
2
1
1
cell line
H1-hESC
8
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