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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ChIP-seq
4
RRBS
4
WGBS
3
DNase-seq
2
ATAC-seq
Assay category
121
DNA binding
8
DNA methylation
5
DNA accessibility
Target of assay
65
histone modification
64
histone
40
transcription factor
33
broad histone mark
30
narrow histone mark
16
control
6
RNA binding protein
3
chromatin remodeller
Date released
564
February, 2021
381
November, 2017
260
May, 2020
260
May, 2021
206
June, 2019
199
October, 2019
134
August, 2017
96
May, 2019
94
December, 2017
81
July, 2019
81
November, 2018
65
April, 2019
47
August, 2021
42
February, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2018
22
September, 2020
20
May, 2022
12
October, 2017
11
July, 2018
10
April, 2018
10
March, 2020
8
January, 2018
5
December, 2019
5
November, 2020
2
June, 2018
1
August, 2018
1
September, 2018
Available data
119
fastq
114
bam
113
bigWig
93
bed narrowPeak
69
tagAlign
29
bed broadPeak
25
bigBed narrowPeak
15
bigBed broadPeak
14
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
Organism
134
Homo sapiens
Biosample type
62
tissue
54
in vitro differentiated cells
18
primary cell
Organ
pancreas
73
connective tissue
29
epithelium
28
liver
19
adipose tissue
15
musculature of body
Project
134
AMP
Genome assembly (visualization)
117
hg19
97
GRCh38
Lab
134
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
March, 2019
organ_slims!
pancreas
BIOSAMPLE
ASSAY
134 results
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Clear Filters
ChIP-seq
RRBS
WGBS
DNase-seq
ATAC-seq
tissue
liver
25
1
1
skeletal muscle tissue
13
2
white adipose tissue
12
adipose tissue
2
3
right lobe of liver
1
+ See 2 more…
in vitro differentiated cells
adipocyte
53
1
primary cell
skeletal muscle myoblast
15
1
2
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