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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
432
ChIP-seq
217
total RNA-seq
21
ATAC-seq
5
DNase-seq
3
Hi-C
3
small RNA-seq
1
WGBS
Assay category
432
DNA binding
220
Transcription
26
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
333
transcription factor
83
histone modification
82
histone
81
recombinant protein
56
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
170
May, 2020
58
February, 2021
52
November, 2018
50
December, 2017
20
May, 2022
18
August, 2017
18
August, 2021
8
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
2
March, 2020
Available data
747
bam
680
bigWig
465
fastq
449
bed narrowPeak
358
bigBed narrowPeak
232
tsv
88
txt
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
5
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
vcf
Organism
682
Homo sapiens
Biosample type
333
cell line
324
tissue
14
in vitro differentiated cells
11
primary cell
Organ
630
pancreas
624
liver
570
connective tissue
425
adipose tissue
307
epithelium
227
heart
222
brain
158
vasculature
153
blood vessel
132
kidney
91
limb
85
artery
70
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
17
vein
16
spleen
6
eye
1
pericardium
1
pituitary gland
Project
682
AMP
Genome assembly (visualization)
677
hg19
586
GRCh38
Lab
647
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
vcf
BIOSAMPLE
ASSAY
682 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
WGBS
cell line
HepG2
326
5
1
1
tissue
liver
82
147
20
2
1
1
bone tissue
58
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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