Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
140
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
111
histone modification
110
histone
55
broad histone mark
54
narrow histone mark
28
transcription factor
6
RNA binding protein
3
chromatin remodeller
1
control
Date released
565
February, 2021
334
November, 2017
301
May, 2021
261
May, 2020
241
August, 2017
199
October, 2019
164
July, 2018
152
August, 2021
97
May, 2019
81
July, 2019
72
September, 2018
71
November, 2018
65
April, 2019
62
December, 2017
49
April, 2018
49
March, 2020
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
25
February, 2020
23
June, 2019
20
May, 2022
19
February, 2023
14
October, 2017
9
December, 2019
8
January, 2018
7
August, 2020
5
September, 2017
4
November, 2020
3
August, 2018
3
June, 2018
3
September, 2020
Available data
287
fastq
282
bam
272
bigWig
142
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
235
Homo sapiens
Biosample type
153
tissue
46
primary cell
42
in vitro differentiated cells
Organ
140
pancreas
55
connective tissue
17
epithelium
16
liver
13
adipose tissue
13
musculature of body
Project
241
AMP
Genome assembly (visualization)
239
hg19
216
GRCh38
Lab
241
AMP-T2D consortium
Audit category:
25
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3+
organ_slims!
large intestine
BIOSAMPLE
ASSAY
241 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
8
89
1
1
liver
15
skeletal muscle tissue
13
pancreas
12
white adipose tissue
8
+ See 4 more…
primary cell
skeletal muscle myoblast
15
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
41
1
See all biosamples
Download